PBS
- Basics
- qsub arguments
Basics
| What | How | Details |
| Start interactive shell | qsh | |
| Start job | qsub $script | |
| Run job interactively | qsub -I | |
| Start parameterized job | ? | |
| View my jobs | ? | |
| CLear queued jobs | qdel -u $user | |
| Kill job | qdel $id | |
| Kill job forcefully | qdel -f $id | |
| Kill range of jobs | qdel {$id_low, $id_high) | |
| Kill array job | qdel $id[] | |
| Kill array job range | qdel -t 1-10 $id[] | |
| Kill all jobs | qselect -u $user | xargs qdel | |
qsub arguments
| What | How | Details |
| Job name | #PBS -N $name | |
| Working directory | #PBS -d . | |
| Standard output log file | #PBS -o $HOME/Logs | |
| Error log file | #PBS -e $HOME/ErrorLogs | |
| Join error output with standard | #PBS -j oe | |
| Join standard output with error | #PBS -j eo | |
| Run job as array | #PBS -t 0-10 | Each job will have a different number in the PBS_ARRAYID environment variable |
| Specify queue | #PBS -q $queue | |
| Specify server | #PBS -q @$server | |
| Specifiy queue at server | #PBS -q $queue@$server | |
| Limit computation time (wall time) | #PBS -l walltime 60 | |
| Limit computation time (wall time) | #PBS -l walltime 00:01:00 | |
| Limit memory usage | #PBS -l nodes=1:ppn=4 | |
| Declare job as rerunnable | #PBS -r y | |