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RStan¶

Code

library(rstan)

Installation¶

For standard installation instructions, see https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started

Action Code Details

Install latest dev version from Github

remotes::install_github("stan-dev/rstan",
    ref = "develop", subdir = "rstan/rstan", build_opts = "")

Reinstall on Windows

# Install rtools
# Check toolchain
pkgbuild::has_build_tools(debug = TRUE)
# Optimize toolchain
dotR <- file.path(Sys.getenv("HOME"), ".R")
if (!file.exists(dotR)) dir.create(dotR)
M <- file.path(dotR, ifelse(.Platform$OS.type == "windows", "Makevars.win", "Makevars"))
if (!file.exists(M)) file.create(M)
cat(
    "
CXX14FLAGS=-O3 -march=native -mtune=native",
    if( grepl("^darwin", R.version$os)) "CXX14FLAGS += -arch x86_64 -ftemplate-depth-256" else
    if (.Platform$OS.type == "windows") "CXX11FLAGS=-O3 -march=corei7 -mtune=corei7" else
    "CXX14FLAGS += -fPIC",
    file = M, sep = "
", append = TRUE
)
# Install package
remove.packages("rstan")
install.packages("rstan", repos = "https://cloud.r-project.org/", dependencies = TRUE)

Reinstall on Linux

# check gcc version
system('gcc -v')
remove.packages("rstan")
remove.packages("StanHeaders")
install.packages('rstan')